Description | Gene markers | Non-adjusted | Tumor purity adjusted | ||
---|---|---|---|---|---|
Cor | P value | Cor | P value | ||
CD4+ T cell | CD4 | 0.425 | *** | 0.412 | *** |
Th1 | STAT4 | 0.154 | ** | 0.106 | 1.9e−02 |
 | TNF | 0.138 | * | 0.083 | 6.63e−02 |
 | TBX21 | 0.105 | 1.71e−02 | 0.06 | 1.8e-01 |
Th2 | STAT5A | 0.334 | *** | 0.305 | *** |
 | STAT6 | 0.333 | *** | 0.353 | *** |
 | GATA3 | 0.126 | * | 0.071 | 1.17e−01 |
Tfh | CCL13 | 0.307 | *** | 0.271 | *** |
 | BCL6 | 0.272 | *** | 0.268 | *** |
 | CCR5 | 0.218 | *** | 0.17 | ** |
Th17 | STAT3 | 0.35 | *** | 0.349 | *** |
 | RORC | 0.163 | ** | 0.194 | *** |
 | IL17A | − 0.094 | 3.32e−02 | − 0.122 | * |
Treg | STAT5B | 0.374 | *** | 0.356 | *** |
 | CCR8 | 0.219 | *** | 0.175 | *** |
 | FOXP3 | 0.133 | * | 0.08 | 7.73e−02 |
T cell exhaustion | HAVCR2 | 0.225 | *** | 0.187 | *** |
 | GZMB | − 0.262 | *** | − 0.333 | *** |
 | CTLA4 | 0.07 | 1.15e−01 | 0.003 | 9.43e−01 |
 | PDCD1 | −0.044 | 3.19e−01 | − 0.113 | 1.24e−02 |
CD8+ T cell | CD8A | −0.02 | 6.52e−01 | − 0.08 | 7.73e−02 |
 | CD8B | −0.116 | * | − 0.17 | ** |
M1 Macrophage | IRF5 | 0.15 | ** | 0.118 | * |
 | NOS2 | 0.13 | * | 0.116 | 1e−02 |
 | PTGS2 | 0.106 | 1.65e−02 | 0.115 | 1.09e−02 |
M2 Macrophage | MS4A4A | 0.306 | *** | 0.28 | *** |
 | CD163 | 0.291 | *** | 0.267 | *** |
 | VSIG4 | 0.241 | *** | 0.215 | *** |
Neutrophil | CEACAM8 | 0.428 | *** | 0.428 | *** |
 | ITGAM | 0.383 | *** | 0.362 | *** |
 | CCR7 | 0.266 | *** | 0.229 | *** |
Dendritic cell | CD1C | 0.522 | *** | 0.499 | *** |
 | HLA-DPB1 | 0.405 | *** | 0.388 | *** |
 | HLA-DPA1 | 0.401 | *** | 0.382 | *** |
 | ITGAX | 0.29 | *** | 0.268 | *** |
TAM | CD68 | 0.234 | *** | 0.212 | *** |
 | IL10 | 0.164 | ** | 0.114 | 1.13e−02 |
 | CCL2 | 0.162 | ** | 0.113 | 1.17e−02 |
B cell | CD27 | 0.077 | 8.08e−02 | 0.027 | 5.48e−01 |
 | CD19 | 0.057 | 1.94e−01 | 0.009 | 8.38e−01 |
 | CD79A | 0.052 | 2.34e−01 | 0.011 | 8.11e−01 |