Table 2 Alleles distribution of the top 10 significant SNPs related to gastric cancer risk

rs421490

chr1:8215224

LINC01714

Downstream

G

137

25.00

47

12.30

1.21E−02

2.38 (1.65–3.41)

A

411

75.00

335

87.70

rs786906

chr1:88805891

PKN2

Exonic

C

214

37.68

201

52.07

7.01E−03

0.56 (0.42–0.723)

T

354

62.32

185

47.93

rs200612063

chr2:203440845

RAPH1

Exonic

G

86

16.10

6

1.58

4.60E−05

11.97 (5.17–27.69)

A

448

83.90

374

98.42

rs141620966

chr3:27315885

NEK10

Intronic

C

86

16.10

2

0.52

2.26E−03

36.67 (8.96–150)

T

448

83.90

382

99.48

rs7640543

chr3:30420911

RBMS3, LINC01985

Intergenic

A

299

0.11

53.78

40.00

3.89E−31

9.54 (6.60–13.79)

G

257

46.22

328

89.13

rs28698945

chr4:8850597

HMX1

Intronic

G

111

20.48

26

6.81

4.38E−04

3.53 (2.25–5.528)

A

431

79.52

356

93.19

rs146971769

chr4:102980615

SLC9B1

Intronic

C

82

15.02

2

0.54

5.55E−03

32.69 (7.98–133.8)

A

464

84.98

370

99.46

rs78326603

chr5:135862851

SLC25A48

Intronic

C

76

13.82

2

0.53

9.74E−03

30.3 (7.39–124.2)

T

474

86.18

378

99.47

rs713383

chr6:42272631

TRERF1

Intronic

A

179

31.63

177

46.09

4.98E−02

0.54 (0.413–0.71)

G

387

68.37

207

53.91

rs9463078

chr6:45213603

SUPT3H

Intronic

G

174

31.64

170

45.45

4.98E−02

0.56 (0.423–0.73)

A

376

68.36

204

54.55