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Table 2 Alleles distribution of the top 10 significant SNPs related to gastric cancer risk

From: Association of single nucleotide polymorphisms (SNPs) with gastric cancer susceptibility and prognosis in population in Wuwei, Gansu, China

SNP ID SNP position Gene Region Allele Case Control PFDR OR (95%CI)
N % N %
rs421490 chr1:8215224 LINC01714 Downstream G 137 25.00 47 12.30 1.21E−02 2.38 (1.65–3.41)
     A 411 75.00 335 87.70   
rs786906 chr1:88805891 PKN2 Exonic C 214 37.68 201 52.07 7.01E−03 0.56 (0.42–0.723)
     T 354 62.32 185 47.93   
rs200612063 chr2:203440845 RAPH1 Exonic G 86 16.10 6 1.58 4.60E−05 11.97 (5.17–27.69)
     A 448 83.90 374 98.42   
rs141620966 chr3:27315885 NEK10 Intronic C 86 16.10 2 0.52 2.26E−03 36.67 (8.96–150)
     T 448 83.90 382 99.48   
rs7640543 chr3:30420911 RBMS3, LINC01985 Intergenic A 299 0.11 53.78 40.00 3.89E−31 9.54 (6.60–13.79)
     G 257 46.22 328 89.13   
rs28698945 chr4:8850597 HMX1 Intronic G 111 20.48 26 6.81 4.38E−04 3.53 (2.25–5.528)
     A 431 79.52 356 93.19   
rs146971769 chr4:102980615 SLC9B1 Intronic C 82 15.02 2 0.54 5.55E−03 32.69 (7.98–133.8)
     A 464 84.98 370 99.46   
rs78326603 chr5:135862851 SLC25A48 Intronic C 76 13.82 2 0.53 9.74E−03 30.3 (7.39–124.2)
     T 474 86.18 378 99.47   
rs713383 chr6:42272631 TRERF1 Intronic A 179 31.63 177 46.09 4.98E−02 0.54 (0.413–0.71)
     G 387 68.37 207 53.91   
rs9463078 chr6:45213603 SUPT3H Intronic G 174 31.64 170 45.45 4.98E−02 0.56 (0.423–0.73)
     A 376 68.36 204 54.55