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Table 2 The KEGG pathway analysis of activated memory CD4 T cells and CD8 T cell-related genes in the Comparative Toxicogenomics Database. The KEGG pathway analysis of activated memory CD4 T cell-related genes

From: Screening and analysis of RNAs associated with activated memory CD4 and CD8 T cells in liver cancer

ID

Description

p value

p.adjust

q value

Count

gene_symbol

hsa04514

Cell adhesion molecules (CAMs)

1.98E-10

1.98E-10

8.55E-09

11

CTLA4/CD8A/CD8B/TIGIT/HLA-DRB1/ICOS/CD86/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa04658

Th1 and Th2 cell differentiation

9.90E-10

9.90E-10

2.14E-08

9

IL12RB1/TBX21/HLA-DRB1/CD3D/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1/LCK

hsa04640

Hematopoietic cell lineage

1.92E-09

1.92E-09

2.76E-08

9

CD8A/CD8B/HLA-DRB1/CD3D/HLA-DPB1/HLA-DQA1/HLA-DRA/FCGR1A/HLA-DPA1

hsa04659

Th17 cell differentiation

3.86E-09

3.86E-09

4.16E-08

9

IL12RB1/TBX21/HLA-DRB1/CD3D/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1/LCK

hsa04060

Cytokine-cytokine receptor interaction

2.07E-05

2.07E-05

3.58E-05

9

CXCL9/CCL4/CCL5/IL12RB1/CD27/CXCR6/CXCL13/CXCR3/CCR5

hsa04612

Antigen processing and presentation

6.37E-09

6.37E-09

4.58E-08

8

CD8A/CD8B/CD74/HLA-DRB1/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa05323

Rheumatoid arthritis

2.61E-08

2.61E-08

1.41E-07

8

CTLA4/CCL5/HLA-DRB1/CD86/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa05322

Systemic lupus erythematosus

4.29E-07

4.29E-07

1.23E-06

8

HLA-DRB1/CD86/HLA-DPB1/FCGR3A/HLA-DQA1/HLA-DRA/FCGR1A/HLA-DPA1

hsa04145

Phagosome

1.19E-06

1.19E-06

2.70E-06

8

HLA-DRB1/HLA-DPB1/FCGR3A/HLA-DQA1/OLR1/HLA-DRA/FCGR1A/HLA-DPA1

hsa05152

Tuberculosis

4.24E-06

4.24E-06

8.72E-06

8

CD74/HLA-DRB1/HLA-DPB1/FCGR3A/HLA-DQA1/HLA-DRA/FCGR1A/HLA-DPA1

hsa04062

Chemokine signaling pathway

6.10E-06

6.10E-06

1.14E-05

8

CXCL9/CCL4/CCL5/CXCR6/CXCL13/CXCR3/CCR5/GNGT2

hsa04672

Intestinal immune network for IgA production

5.76E-09

5.76E-09

4.58E-08

7

HLA-DRB1/ICOS/CD86/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa05320

Autoimmune thyroid disease

1.02E-08

1.02E-08

6.27E-08

7

CTLA4/HLA-DRB1/CD86/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa05321

Inflammatory bowel disease (IBD)

4.38E-08

4.38E-08

1.72E-07

7

IL12RB1/TBX21/HLA-DRB1/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa05140

Leishmaniasis

1.44E-07

1.44E-07

4.45E-07

7

HLA-DRB1/HLA-DPB1/FCGR3A/HLA-DQA1/HLA-DRA/FCGR1A/HLA-DPA1

hsa04660

T cell receptor signaling pathway

1.14E-06

1.14E-06

2.70E-06

7

CTLA4/CD8A/CD8B/ICOS/CD3D/LCP2/LCK

hsa04380

Osteoclast differentiation

4.63E-06

4.63E-06

9.08E-06

7

SIRPG/LILRB2/LILRB1/FCGR3A/FCGR1A/LCP2/LCK

hsa05166

Human T cell leukemia virus 1 infection

0.000148

0.000148

0.000237

7

HLA-DRB1/CD3D/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1/LCK

hsa05168

Herpes simplex virus 1 infection

0.014966

0.014966

0.018997

7

CCL5/CD74/HLA-DRB1/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa05330

Allograft rejection

4.14E-08

4.14E-08

1.72E-07

6

HLA-DRB1/CD86/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa05332

Graft-versus-host disease

6.67E-08

6.67E-08

2.40E-07

6

HLA-DRB1/CD86/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa04940

Type I diabetes mellitus

8.97E-08

8.97E-08

2.98E-07

6

HLA-DRB1/CD86/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa05416

Viral myocarditis

6.88E-07

6.88E-07

1.75E-06

6

HLA-DRB1/CD86/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa05145

Toxoplasmosis

2.67E-05

2.67E-05

4.44E-05

6

HLA-DRB1/HLA-DPB1/HLA-DQA1/HLA-DRA/CCR5/HLA-DPA1

hsa05164

Influenza A

0.000272

0.000272

0.000419

6

CCL5/HLA-DRB1/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa05169

Epstein-Barr virus infection

0.000665

0.000665

0.000989

6

HLA-DRB1/CD3D/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa05310

Asthma

5.48E-07

5.48E-07

1.48E-06

5

HLA-DRB1/HLA-DPB1/HLA-DQA1/HLA-DRA/HLA-DPA1

hsa04620

Toll-like receptor signaling pathway

0.002276

0.002276

0.003274

4

CXCL9/CCL4/CCL5/CD86

hsa04650

Natural killer cell mediated cytotoxicity

0.005222

0.005222

0.007042

4

FCGR3A/SH2D1A/LCP2/LCK

hsa04623

Cytosolic DNA-sensing pathway

0.004625

0.004625

0.006439

3

CCL4/CCL5/ZBP1

hsa04662

B cell receptor signaling pathway

0.00961

0.00961

0.012568

3

LILRB2/CD72/LILRB1