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Table 4 Microsatellite markers used for MSI and LOH detection in pancreatic tumor tissue, liver metastasis tissue, and normal liver tissue

From: MSH2 and CXCR4 involvement in malignant VIPoma

  

Tissue

Pancreatic tumor

Liver metastasis

Normal liver

Marker

Localization

  

AP ratio

 

AP ratio

 

AP ratio

D1S104

1q21-23

 

LOH

0.2

LOH

0.49

MSS

>0.7

D2S443

2p13

 

LOH

0.19

LOH

0.42

MSS

>0.7

BAT26

2p16

 

MSS

>0.7

MSS

>0.7

MSS

>0.7

D2S123

2p16

 

LOH

0.21

LOH

0.45

MSS

>0.7

D3S1284

3p12

 

LOH

0.19

LOH

0.47

MSS

>0.7

BAT25

4q12

 

MSS

>0.7

MSS

>0.7

MSS

>0.7

D5S326

5q22.2

 

LOH

0.2

LOH

0.31

LOH

0.32

D16S752

16q22

 

LOH

0.12

LOH

0.39

MSS

>0.7

D17S250

17q11.2-12

 

MSS

>0.7

MSS

>0.7

MSS

>0.7

D21S1436

21q21

 

LOH

0.6

LOH

0.4

LOH

0.59

  1. AP ratio, Allele peak ratio; LOH, Loss of heterozygosity; MSS, Microsatellite stable.