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Table 2 The basic information and HWE about the candidate SNPs of CYP4B1

From: Missense variants in CYP4B1 associated with increased risk of lung cancer among Chinese Han population

SNP ID

Function

Amino acid

Chr: Position

Alleles

(A/B)

MAF

MAF in different populations

HWE

(P Value)

Haploreg 4.1

Cases

Controls

CHB

CHS

AFR

EUR

rs2297810

missense

M (Met) >

I (Ile)

1: 46815187

A/G

0.242

0.230

0.335

0.333

0.461

0.131

0.103

SiPhy cons; Enhancer histone marks; Motifs changed; GRASP eQTL hits; Selected eQTL hits

rs4646491

missense

R (Arg) >

S (Ser)

1: 46815212

T/C

0.232

0.230

0.330

0.305

0.039

0.130

0.103

SiPhy cons; Enhancer histone marks; Motifs changed; GRASP eQTL hits; Selected eQTL hits

rs2297809

missense

R (Arg) >

C (Cys)

1: 46817100

T/C

0.231

0.229

0.330

0.300

0.130

0.126

0.100

SiPhy cons; Motifs changed; Selected eQTL hits

  1. Met Methionine, Ile Isoleucine, Arg Arginine, Ser Serine, Cys Cystine, A minor allele, B wild-type allele, HWE Hardy–Weinberg equilibrium, SNP Single nucleotide polymorphisms, MAF Minor allele frequency, CHB Han Chinese in Beijing, China, CHS Han Chinese in Shanghai, China, EUR European, AFR African
  2. P > 0.05 indicates that the genotypes were in Hard-weinberg Equilibrium