Table 3 List of top 20 candidate hypermethylated/hypomethylated genes in colorectal cancers
Differentially hypermethylated/hypomethylated genes | |||||
|---|---|---|---|---|---|
CpG ID | Δβ | Chromosome | Gene name | Gene-based region | CpG island-based region |
cg21101720 | 0.632 | 17 | ANKRD13B | Body | Island |
cg13895235 | 0.594 | 7 | PRKAR1B | 5′UTR | S_Shore |
cg07136998 | 0.540 | 5 | SLIT3 | 5′UTR | Island |
cg12628196 | 0.527 | 7 | SND1 | Body | Island |
cg21277995 | 0.527 | 6 | IRF4 | Body | Island |
cg13001868 | 0.521 | 17 | C17orf46 | Body | Island |
cg13267264 | 0.518 | 8 | PRDM14 | TSS200 | Island |
cg20219457 | 0.516 | 13 | DCLK1 | 1stExon | Island |
cg14650610 | 0.513 | 5 | SPOCK1 | 5′UTR | Island |
cg00421139 | 0.513 | 8 | GDF6 | 1stExon | Island |
cg21842523 | 0.511 | 11 | LMO1 | Body | Island |
cg03394150 | 0.510 | 16 | GSG1L | Body | Island |
cg07974511 | 0.509 | 2 | OTX1 | Body | Island |
cg16601494 | 0.504 | 1 | C1orf70 | 5′UTR | N_Shore |
cg04883903 | 0.504 | 12 | NOS1 | 5′UTR | Island |
cg04455164 | 0.501 | 12 | DPY19L2 | TSS1500 | Island |
cg00817367 | 0.498 | 12 | GRASP | Body | Island |
cg17362861 | 0.498 | 7 | WDR86 | TSS200 | Island |
cg14763548 | 0.497 | 20 | VSX1 | 1stExon | Island |
cg13484546 | 0.497 | 1 | FBLIM1 | TSS1500 | N_Shore |
cg09701880 | − 0.476 | 2 | LOC541471 | Body | Island |
cg13324103 | − 0.448 | 10 | SVIL | 5′UTR | Open sea |
cg00863099 | − 0.420 | 2 | NCRNA00152 | 3′UTR | Island |
cg11838152 | − 0.419 | 13 | ITGBL1 | 1stExon | Island |