Table 2 List of top 20 candidate hypermethylated/hypomethylated genes in adenomas
Differentially hypermethylated CpG sites | Differentially hypomethylated CpG sites | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
CpG ID | Δβ | Chromosome | Gene name | Gene-based region | CpG island-based region | CpG ID | Δβ | Chromosome | Gene name | Gene-based region | CpG island-based region |
cg09296001 | 0.702 | 7 | SND1 | Body | Island | cg01372366 | − 0.518 | 11 | PTPRJ | Body | Open sea |
cg19358877 | 0.701 | 19 | ZNF471 | 1stExon | Island | cg24032190 | − 0.513 | 15 | SMAD3 | Body | Open sea |
cg13895235 | 0.622 | 7 | PRKAR1B | 5′UTR | S_Shore | cg26668151 | − 0.488 | 7 | DNAJB6 | Body | Open sea |
cg22474464 | 0.617 | 20 | NKX2-2 | Body | Island | cg11228682 | − 0.487 | 6 | ATXN1 | Body | Open sea |
cg06952671 | 0.598 | 2 | ITGA4 | 5′UTR | Island | cg14284630 | − 0.483 | 11 | OR5T3 | TSS1500 | Open sea |
cg04292718 | 0.588 | 1 | CD34 | 5′UTR | Island | cg06197966 | − 0.481 | 10 | SVIL | 5′UTR | Open sea |
cg25884711 | 0.652 | 7 | NPY | 5′UTR | Island | cg00438740 | − 0.470 | 2 | INPP5D | TSS200 | N_Shore |
cg22434409 | 0.579 | 4 | KCNIP4 | TSS1500 | Island | cg02939767 | − 0.459 | 20 | TCF15 | 3′UTR | Open sea |
cg12664464 | 0.578 | 20 | GATA5 | 1stExon | Island | cg04923875 | − 0.459 | 1 | TNR | 5′UTR | Open sea |
cg16791424 | 0.575 | 14 | NOVA1 | TSS1500 | S_Shore | cg02107844 | − 0.453 | 15 | SLCO3A1 | Body | Open sea |
cg16741041 | 0.575 | 13 | SPG20 | 5′UTR | Island | cg03301058 | − 0.452 | 6 | GABRR2 | Body | Open sea |
cg05842348 | 0.565 | 14 | PAX9 | Body | S_Shore | cg13942186 | − 0.452 | 9 | EXD3 | 5′UTR | Open sea |
cg03976877 | 0.563 | 7 | VIPR2 | 1stExon | Island | cg03796321 | − 0.452 | 15 | AKAP13 | Body | Open sea |
cg25784220 | 0.562 | 19 | ZSCAN18 | 1stExon | Island | cg06178383 | − 0.451 | 16 | SCNN1G | Body | Open sea |
cg22065614 | 0.557 | 4 | GLRB | 1stExon | Island | cg27423177 | − 0.448 | 12 | C3AR1 | TSS1500 | Open sea |
cg24152605 | 0.559 | 19 | ZFP28 | 1stExon | Island | cg08942191 | − 0.446 | 15 | ARNT2 | Body | Open sea |
cg09248054 | 0.557 | 1 | AGRN | Body | Island | cg23622047 | − 0.438 | 2 | RAPGEF4 | Body | Open sea |
cg24371075 | 0.553 | 17 | MYH10 | 5′UTR | Island | cg00370106 | − 0.437 | 6 | SYTL3 | 1stExon | Open sea |
cg14270292 | 0.550 | 6 | EYA4 | 5′UTR | Island | cg24721964 | − 0.433 | 3 | CLRN1 | TSS1500 | Open sea |
cg15139588 | 0.547 | 19 | ZNF793 | 5′UTR | Island | cg01437515 | − 0.427 | 1 | TNFRSF4 | Body | N_Shore |